 
####################################################### 
#                                                     # 
#                        ACE                          # 
#                                                     # 
#        Ab-initio protein structure prediction       # 
#                         &                           # 
#               Comparative modeling                  # 
#                                                     # 
#                     Evaluator                       # 
#                                                     # 
#                ----------------- 11/1998            # 
#                                                     # 
#                         by                          # 
#           Adam Zemla & Ceslovas Venclovas           # 
#                                                     # 
#         Protein Structure Prediction Center         # 
#      Lawrence Livermore National Laboratory, CA     # 
#                                                     # 
####################################################### 
########################## 
#                        # 
#    ACE parameters:     # 
#                        # 
########################## 
# 
# MEASURES: 
# 
# For AB: 0 3 9 13 14 
# For CM: 0 1 2 3 6 7 8 9 10 11 12 13 14 18 
# 
ARMSMC  0 1 2     7 8 9    11 12 13 14 18 
ARMSSC  0 1 2 3 6 7 8 9    11 12 13 14 18 
# 
CRMSCA  0 1 2     7 8 9 10 11 12 13 14 18 
CRMSMC  0 1 2     7 8 9 10 11 12 13 14 18 
CRMSSC  0 1 2 3 6     9    11 12 13 14 18 
CRMSALL 0 1 2     7 8 9    11 12 13 14 18 
# 
D-E_CA  0 1 2     7 8 9    11 12 13 14 18 
D-E_MC  0 1 2     7 8 9    11 12 13 14 18 
D-E_SC  0 1 2 3 6 7 8 9    11 12 13 14 18 
D-E_ALL 0 1 2     7 8 9    11 12 13 14 18 
# 
# Output parameters 
# 
DIHED-OUTPUT        0         #    1 - ON, 0 - OFF 
RES-CONTACTS        0         #    1 - ON, 0 - OFF 
SS-OUTPUT           1         #    1 - ON, 0 - OFF 
PHI-PSI             0         #    1 - SEPARATELY, 0 - NO  
# 
# Calculation parameters 
# 
SOV-METHOD          1         #    0 - SOV 94,  1 - SOV 
# 
TEMP-FACTOR         30.0      #    Target structure temperature factor cutoff 
ACCESS-CUTOFF       0.20      #    Solvent accessibility cutoff   
ANGLES-CORRECT      30.0      #    target-model  (diff < 30.0)    
DSSP-HELIX          6         #    Secondary Structure subset: helix cutoff  
DSSP-STRAND         3         #    Secondary Structure subset: strand cutoff 
ROTAMERS-LIMIT      30.0      #    target-parent (diff > 30.0) 
ROTATION-MATRIX     0         #    1 - ON, 0 - OFF   
SC-SWAPPING         1         #    1 - ON, 0 - OFF    
SEP-CONTACTS        1         #    Separation interval along the chain 
RESIDUE-CONTACTS    8.0       #    Contact definition between two C-beta atoms 
# 
CRMS-METHOD         1         #    0 - ALL, 1 - CA, 2 - MC+CB, 3 - CA (iter)  
ITER-CUTOFF         2.5       #    DISTANCE cutoff (for CA (iter))  
LCS_GDT             1         #    LCS and GDT calculations (1 - ON, 0 - OFF) 
########################## 
#                        # 
#      ACE results:      # 
#                        # 
########################## 
 
 
 
# WARNING! The number of residues in SS section: 64 , MODEL 64 , TARGET 493 
#          The number of residues possible to evaluate: 64 
 
 
 SECONDARY STRUCTURE PREDICTION: 
       NUM    RES   SS   Prediction   Probability 
 SSP   338     E     E     C             1.00 
 SSP   339     A     E     C             1.00 
 SSP   340     L     E     E             1.00 
 SSP   341     L     E     E             1.00 
 SSP   342     A     E     E             1.00 
 SSP   343     V     E     E             1.00 
 SSP   344     T     E     E             1.00 
 SSP   345     I     E     E             1.00 
 SSP   346     P     C     C             1.00 
 SSP   347     E     C     C             1.00 
 SSP   348     E     C     C             1.00 
 SSP   349     K     C     C             1.00 
 SSP   350     G     C     C             1.00 
 SSP   351     S     C     H             1.00 
 SSP   352     F     C     H             1.00 
 SSP   353     L     H     H             1.00 
 SSP   354     K     H     H             1.00 
 SSP   355     F     H     H             1.00 
 SSP   356     C     H     H             1.00 
 SSP   357     Q     H     H             1.00 
 SSP   358     L     C     C             1.00 
 SSP  BREAK 
 SSP   363     S     E     C             1.00 
 SSP   364     V     E     E             1.00 
 SSP   365     T     E     E             1.00 
 SSP   366     E     E     E             1.00 
 SSP   367     F     E     E             1.00 
 SSP   368     N     E     E             1.00 
 SSP   369     Y     E     E             1.00 
 SSP   370     R     E     E             1.00 
 SSP   371     F     C     E             1.00 
 SSP   372     A     C     C             1.00 
 SSP  BREAK 
 SSP   376     N     C     C             1.00 
 SSP   377     A     E     E             1.00 
 SSP   378     C     E     E             1.00 
 SSP   379     I     E     E             1.00 
 SSP   380     F     E     E             1.00 
 SSP   381     V     E     E             1.00 
 SSP   382     G     E     E             1.00 
 SSP   383     V     E     E             1.00 
 SSP   384     R     E     C             1.00 
 SSP   385     L     C     C             1.00 
 SSP   386     S     C     C             1.00 
 SSP  BREAK 
 SSP   390     E     H     C             1.00 
 SSP   391     E     H     H             1.00 
 SSP   392     R     H     H             1.00 
 SSP   393     K     H     H             1.00 
 SSP   394     E     H     H             1.00 
 SSP   395     I     H     H             1.00 
 SSP   396     L     H     H             1.00 
 SSP   397     Q     H     H             1.00 
 SSP   398     M     H     H             1.00 
 SSP   399     L     H     H             1.00 
 SSP   400     N     C     H             1.00 
 SSP   401     D     C     C             1.00 
 SSP   402     G     C     C             1.00 
 SSP   403     G     C     C             1.00 
 SSP   404     Y     C     C             1.00 
 SSP   405     S     E     C             1.00 
 SSP   406     V     E     E             1.00 
 SSP   407     V     C     E             1.00 
 SSP   408     D     C     E             1.00 
 SSP   409     L     C     E             1.00 
 SSP   410     S     C     C             1.00 
 SSP   411     D     C     C             1.00 
 SSP  BREAK 
 
 NP      - Number of predicted residues 
 PP      - Percent of predicted residues 
 Q3      - Residues predicted correctly (H, E, C) 
 Qhelix  - Residues predicted correctly (HELIX) 
 Qstrand - Residues predicted correctly (STRAND) 
 Qcoil   - Residues predicted correctly (COIL) 
 SOV     - Segment overlap quantity 
 
                     Q3      Qhelix   Qstrand   Qcoil      PP 
 Qindex              79.7      93.3     80.8     69.6     13.0 
 
                     ALL      HELIX    STRAND    COIL      PP 
 SOV observed        93.4     100.0     95.4     87.0     13.0 
 
           Considered    Percent predicted   Percent predicted 
            segments        correctly         as wrong type 
 SEG            6             100.0               0.0 
 
         Number of wrong    Number of wrong 
             breaks             joins 
 B/J            0                 0 
 
  CONFIDENCE (P)     Average     NP    PP/BIN     Q3 
 BIN  0.90 - 1.00      1.00      64    100.0     79.7 
 
 BIN  0.00 - 1.00      1.00      64    100.0     79.7 
 
 
 
 
              predicted        number of target      total number   total number 
                as a         contacts possible in         of             of 
               contact         predicted subset:       contacts       contacts 
            percent  number    percent    number       in target    in prediction 
 CONTACTS:     0.0      0         0.0        0             0              0 
 
 
 
 CONSIDERED - explicitly provided contacts (with positive confidence) or 
              non contacts (with negative confidence) possible to evaluate 
 SEP      - Minimum separation between residues considered 
 NPC      - Number of contacts predicted correctly 
 PC(P)    - Percent of contacts predicted correctly from CONSIDERED in PREDICTION 
 PC(T)    - Percent of contacts predicted correctly from CONSIDERED in TARGET with SEP limit 
 PC(TT)   - Percent of contacts predicted correctly from TOTAL in TARGET with SEP limit 
 
                        CONSIDERED     CONSIDERED       TOTAL          TOTAL 
                      in PREDICTION    in TARGET    in PREDICTION    in TARGET 
 ALL RESIDUES USED          62              62            62            489 
 ALL CONTACTS (< 8.0A)     266             238           266           2555 
 
               in PREDICTION      Predicted correctly          Submitted as        in TARGET 
                CONSIDERED     NPC   PC(P)   PC(T)   PC(TT)    NOT  predicted   CONSIDERED  TOTAL  |   SEP 
 RES CONTACTS       266        200   75.19   84.03    7.83       0     0.00         238      2555  |   1-9999 
 RES CONTACTS       142        128   90.14   92.75    9.67       0     0.00         138      1324  |   1-4    
 RES CONTACTS        15          5   33.33   50.00    4.13       0     0.00          10       121  |   5-8    
 RES CONTACTS       109         67   61.47   74.44    6.04       0     0.00          90      1110  |   9-9999 
 
 
 
# WARNING! TARGET 3589 atoms, MODEL 3764 atoms, 3447 common with TARGET 
           Number of atoms possible to evaluate: 314 
 
MEASURES: 
 
 
ANGLES RMS : model <-> target 
 
 (MC: PHI+PSI) DIHED RMS:      ARMSMC            PC     NP     PP     TN 
     ALL . . . . . . . . . .    59.58           55.0   120    12.2   981     ARMSMC  
     SECONDARY STRUCTURE . .    36.40           69.2    65    13.1   497     ARMSMC  
     SURFACE . . . . . . . .    72.25           41.5    53    10.8   493     ARMSMC  
     BURIED  . . . . . . . .    47.22           65.7    67    13.7   488     ARMSMC  
 (SC: CHI1) DIHED RMS:         ARMSSC            PC     NP     PP     TN 
     ALL . . . . . . . . . .     0.00            0.0     0     0.0   339     ARMSSC1 
     RELIABLE SIDE CHAINS  .     0.00            0.0     0     0.0   303     ARMSSC1 
     SECONDARY STRUCTURE . .     0.00            0.0     0     0.0   187     ARMSSC1 
     SURFACE . . . . . . . .     0.00            0.0     0     0.0   174     ARMSSC1 
     BURIED  . . . . . . . .     0.00            0.0     0     0.0   165     ARMSSC1 
 (SC: CHI2) DIHED RMS:         ARMSSC            PC     NP     PP     TN 
     ALL . . . . . . . . . .     0.00            0.0     0     0.0   262     ARMSSC2 
     RELIABLE SIDE CHAINS  .     0.00            0.0     0     0.0   186     ARMSSC2 
     SECONDARY STRUCTURE . .     0.00            0.0     0     0.0   145     ARMSSC2 
     SURFACE . . . . . . . .     0.00            0.0     0     0.0   150     ARMSSC2 
     BURIED  . . . . . . . .     0.00            0.0     0     0.0   112     ARMSSC2 
 (SC: CHI3) DIHED RMS:         ARMSSC            PC     NP     PP     TN 
     ALL . . . . . . . . . .     0.00            0.0     0     0.0    93     ARMSSC3 
     RELIABLE SIDE CHAINS  .     0.00            0.0     0     0.0    76     ARMSSC3 
     SECONDARY STRUCTURE . .     0.00            0.0     0     0.0    56     ARMSSC3 
     SURFACE . . . . . . . .     0.00            0.0     0     0.0    65     ARMSSC3 
     BURIED  . . . . . . . .     0.00            0.0     0     0.0    28     ARMSSC3 
 (SC: CHI4) DIHED RMS:         ARMSSC            PC     NP     PP     TN 
     ALL . . . . . . . . . .     0.00            0.0     0     0.0    35     ARMSSC4 
     RELIABLE SIDE CHAINS  .     0.00            0.0     0     0.0    35     ARMSSC4 
     SECONDARY STRUCTURE . .     0.00            0.0     0     0.0    21     ARMSSC4 
     SURFACE . . . . . . . .     0.00            0.0     0     0.0    26     ARMSSC4 
     BURIED  . . . . . . . .     0.00            0.0     0     0.0     9     ARMSSC4 
 
COORDINATES RMS : model <-> target 
 
 
LONGEST_CONTINUOUS_SEGMENT (Longest continuous sequence under CA RMS cutoff   5.00): 
 FRAGMENT  1  338 - 358  21   Length     Seq        L_RMS   ALL_CA_RMS 
  LONGEST_CONTINUOUS_SEGMENT    21    338 - 358      2.16     2.16 
  LCS LOCAL_SCORE:            100.00 
 
 FRAGMENT  2  363 - 372  10   Length     Seq        L_RMS   ALL_CA_RMS 
  LONGEST_CONTINUOUS_SEGMENT    10    363 - 372      0.87     0.87 
  LCS LOCAL_SCORE:            100.00 
 
 FRAGMENT  3  376 - 386  11   Length     Seq        L_RMS   ALL_CA_RMS 
  LONGEST_CONTINUOUS_SEGMENT    11    376 - 386      1.38     1.38 
  LCS LOCAL_SCORE:            100.00 
 
 FRAGMENT  4  390 - 411  22   Length     Seq        L_RMS   ALL_CA_RMS 
  LONGEST_CONTINUOUS_SEGMENT    22    390 - 411      2.85     2.85 
  LCS LOCAL_SCORE:            100.00 
 
 
LONGEST_CONTINUOUS_SEGMENT (Longest continuous sequence under CA RMS cutoff   2.00): 
 FRAGMENT  1  338 - 358  21   Length     Seq        L_RMS   ALL_CA_RMS 
  LONGEST_CONTINUOUS_SEGMENT    11    348 - 358      1.64     2.88 
  LCS LOCAL_SCORE:             50.11 
 
 FRAGMENT  2  363 - 372  10   Length     Seq        L_RMS   ALL_CA_RMS 
  LONGEST_CONTINUOUS_SEGMENT    10    363 - 372      0.87     0.87 
  LCS LOCAL_SCORE:            100.00 
 
 FRAGMENT  3  376 - 386  11   Length     Seq        L_RMS   ALL_CA_RMS 
  LONGEST_CONTINUOUS_SEGMENT    11    376 - 386      1.38     1.38 
  LCS LOCAL_SCORE:            100.00 
 
 FRAGMENT  4  390 - 411  22   Length     Seq        L_RMS   ALL_CA_RMS 
  LONGEST_CONTINUOUS_SEGMENT    15    390 - 404      1.47     3.56 
  LCS LOCAL_SCORE:             57.44 
 
 
LONGEST_CONTINUOUS_SEGMENT (Longest continuous sequence under CA RMS cutoff   1.00): 
 FRAGMENT  1  338 - 358  21   Length     Seq        L_RMS   ALL_CA_RMS 
  LONGEST_CONTINUOUS_SEGMENT     7    351 - 357      0.97     3.51 
  LONGEST_CONTINUOUS_SEGMENT     7    352 - 358      0.34     2.26 
  LCS LOCAL_SCORE:             26.76 
 
 FRAGMENT  2  363 - 372  10   Length     Seq        L_RMS   ALL_CA_RMS 
  LONGEST_CONTINUOUS_SEGMENT    10    363 - 372      0.87     0.87 
  LCS LOCAL_SCORE:            100.00 
 
 FRAGMENT  3  376 - 386  11   Length     Seq        L_RMS   ALL_CA_RMS 
  LONGEST_CONTINUOUS_SEGMENT    10    376 - 385      0.89     1.58 
  LCS LOCAL_SCORE:             85.12 
 
 FRAGMENT  4  390 - 411  22   Length     Seq        L_RMS   ALL_CA_RMS 
  LONGEST_CONTINUOUS_SEGMENT    13    390 - 402      0.76     3.82 
  LCS LOCAL_SCORE:             41.94 
 
 
 LCS                   LENGTH_OF_THE 
 LCS  RESIDUE  RESIDUE    CONTINUOUS  SECONDARY 
 LCS   NUMBER     NAME       SEGMENT  STRUCTURE   GDT_DATA_COLUMNS (PERCENT OF THE TARGET) 
 LCS     338       E     5   10   21       E        1   2   3   6   9   9  10  10  11  12  12  12  12  12  12  12  12  12  12  12  
 LCS     339       A     5   10   21       E        1   2   5   7   9   9  10  10  11  12  12  12  12  12  12  12  12  12  12  12  
 LCS     340       L     5   10   21       E        1   4   6   7   9   9  10  10  11  12  12  12  12  12  12  12  12  12  12  12  
 LCS     341       L     5   10   21       E        1   3   6   7   9   9  10  10  11  12  12  12  12  12  12  12  12  12  12  12  
 LCS     342       A     5   10   21       E        0   3   5   7   9   9  10  10  11  12  12  12  12  12  12  12  12  12  12  12  
 LCS     343       V     5   10   21       E        1   4   6   7   9   9  10  10  11  12  12  12  12  12  12  12  12  12  12  12  
 LCS     344       T     5   10   21       E        0   1   6   7   9   9  10  10  11  12  12  12  12  12  12  12  12  12  12  12  
 LCS     345       I     5   10   21       E        0   0   1   2   6   8  10  10  11  12  12  12  12  12  12  12  12  12  12  12  
 LCS     346       P     5   10   21       C        0   3   6   7   9   9  10  10  11  12  12  12  12  12  12  12  12  12  12  12  
 LCS     347       E     5   10   21       C        0   3   6   7   9   9  10  10  11  12  12  12  12  12  12  12  12  12  12  12  
 LCS     348       E     4   11   21       C        0   1   3   5   6   8  10  10  11  12  12  12  12  12  12  12  12  12  12  12  
 LCS     349       K     4   11   21       C        0   0   1   5   6   6   9  10  11  12  12  12  12  12  12  12  12  12  12  12  
 LCS     350       G     4   11   21       C        0   0   0   5   6   7   9  10  11  12  12  12  12  12  12  12  12  12  12  12  
 LCS     351       S     7   11   21       C        0   1   1   2   4   5   8  10  11  11  12  12  12  12  12  12  12  12  12  12  
 LCS     352       F     7   11   21       C        1   3   5   7   9   9  10  10  11  12  12  12  12  12  12  12  12  12  12  12  
 LCS     353       L     7   11   21       H        1   3   5   7   9   9  10  10  11  12  12  12  12  12  12  12  12  12  12  12  
 LCS     354       K     7   11   21       H        1   3   5   7   9   9  10  10  11  12  12  12  12  12  12  12  12  12  12  12  
 LCS     355       F     7   11   21       H        1   3   5   7   9   9  10  10  11  12  12  12  12  12  12  12  12  12  12  12  
 LCS     356       C     7   11   21       H        1   3   5   7   9   9  10  10  11  12  12  12  12  12  12  12  12  12  12  12  
 LCS     357       Q     7   11   21       H        1   3   5   7   9   9  10  10  11  12  12  12  12  12  12  12  12  12  12  12  
 LCS     358       L     7   11   21       C        1   3   5   7   9   9  10  10  11  12  12  12  12  12  12  12  12  12  12  12  
 LCS     359       L     0    0    0       C        0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0  
 LCS     360       G     0    0    0       C        0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0  
 LCS     361       G     0    0    0       C        0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0  
 LCS     362       R     0    0    0       C        0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0  
 LCS     363       S    10   10   10       E        1   4   6   7   9   9  10  10  11  12  12  12  12  12  12  12  12  12  12  12  
 LCS     364       V    10   10   10       E        1   4   6   7   9   9  10  10  11  12  12  12  12  12  12  12  12  12  12  12  
 LCS     365       T    10   10   10       E        1   4   6   7   9   9  10  10  11  12  12  12  12  12  12  12  12  12  12  12  
 LCS     366       E    10   10   10       E        1   3   6   7   9   9  10  10  11  12  12  12  12  12  12  12  12  12  12  12  
 LCS     367       F    10   10   10       E        1   4   6   7   9   9  10  10  11  12  12  12  12  12  12  12  12  12  12  12  
 LCS     368       N    10   10   10       E        1   4   6   7   9   9  10  10  11  12  12  12  12  12  12  12  12  12  12  12  
 LCS     369       Y    10   10   10       E        0   2   5   7   9   9  10  10  11  12  12  12  12  12  12  12  12  12  12  12  
 LCS     370       R    10   10   10       E        0   2   5   6   9   9  10  10  11  12  12  12  12  12  12  12  12  12  12  12  
 LCS     371       F    10   10   10       C        0   2   5   5   7   9  10  10  11  12  12  12  12  12  12  12  12  12  12  12  
 LCS     372       A    10   10   10       C        0   0   5   6   9   9  10  10  11  12  12  12  12  12  12  12  12  12  12  12  
 LCS     373       D     0    0    0       C        0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0  
 LCS     374       A     0    0    0       C        0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0  
 LCS     375       K     0    0    0       C        0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0  
 LCS     376       N    10   11   11       C        1   3   6   7   9   9  10  10  11  12  12  12  12  12  12  12  12  12  12  12  
 LCS     377       A    10   11   11       E        1   4   6   7   9   9  10  10  11  12  12  12  12  12  12  12  12  12  12  12  
 LCS     378       C    10   11   11       E        1   4   6   7   9   9  10  10  11  12  12  12  12  12  12  12  12  12  12  12  
 LCS     379       I    10   11   11       E        1   4   6   7   9   9  10  10  11  12  12  12  12  12  12  12  12  12  12  12  
 LCS     380       F    10   11   11       E        1   4   6   7   9   9  10  10  11  12  12  12  12  12  12  12  12  12  12  12  
 LCS     381       V    10   11   11       E        1   4   6   7   9   9  10  10  11  12  12  12  12  12  12  12  12  12  12  12  
 LCS     382       G    10   11   11       E        1   4   6   7   9   9  10  10  11  12  12  12  12  12  12  12  12  12  12  12  
 LCS     383       V    10   11   11       E        1   4   6   7   9   9  10  10  11  12  12  12  12  12  12  12  12  12  12  12  
 LCS     384       R    10   11   11       E        1   4   6   7   9   9  10  10  11  12  12  12  12  12  12  12  12  12  12  12  
 LCS     385       L    10   11   11       C        1   4   6   7   9   9  10  10  11  12  12  12  12  12  12  12  12  12  12  12  
 LCS     386       S     3   11   11       C        0   0   0   1   2   6  10  10  11  12  12  12  12  12  12  12  12  12  12  12  
 LCS     387       R     0    0    0       C        0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0  
 LCS     388       G     0    0    0       C        0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0  
 LCS     389       L     0    0    0       H        0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0  
 LCS     390       E    13   15   22       H        1   3   6   7   9   9  10  10  11  12  12  12  12  12  12  12  12  12  12  12  
 LCS     391       E    13   15   22       H        1   3   6   7   9   9  10  10  11  12  12  12  12  12  12  12  12  12  12  12  
 LCS     392       R    13   15   22       H        1   3   6   7   9   9  10  10  11  12  12  12  12  12  12  12  12  12  12  12  
 LCS     393       K    13   15   22       H        1   3   6   7   9   9  10  10  11  12  12  12  12  12  12  12  12  12  12  12  
 LCS     394       E    13   15   22       H        1   4   6   7   9   9  10  10  11  12  12  12  12  12  12  12  12  12  12  12  
 LCS     395       I    13   15   22       H        1   4   6   7   9   9  10  10  11  12  12  12  12  12  12  12  12  12  12  12  
 LCS     396       L    13   15   22       H        1   4   6   7   9   9  10  10  11  12  12  12  12  12  12  12  12  12  12  12  
 LCS     397       Q    13   15   22       H        1   3   6   7   9   9  10  10  11  12  12  12  12  12  12  12  12  12  12  12  
 LCS     398       M    13   15   22       H        1   3   6   7   9   9  10  10  11  12  12  12  12  12  12  12  12  12  12  12  
 LCS     399       L    13   15   22       H        1   3   6   7   9   9  10  10  11  12  12  12  12  12  12  12  12  12  12  12  
 LCS     400       N    13   15   22       C        1   3   6   7   9   9  10  10  11  12  12  12  12  12  12  12  12  12  12  12  
 LCS     401       D    13   15   22       C        0   3   6   7   9   9  10  10  11  12  12  12  12  12  12  12  12  12  12  12  
 LCS     402       G    13   15   22       C        1   4   6   7   9   9  10  10  11  12  12  12  12  12  12  12  12  12  12  12  
 LCS     403       G     4   15   22       C        0   0   1   1   2   3   5  10  11  12  12  12  12  12  12  12  12  12  12  12  
 LCS     404       Y     4   15   22       C        0   0   1   1   3   7  10  10  11  12  12  12  12  12  12  12  12  12  12  12  
 LCS     405       S     4   10   22       E        0   0   0   1   1   2   2   5   9  11  11  12  12  12  12  12  12  12  12  12  
 LCS     406       V     4   10   22       E        0   0   1   1   2   3   5   7   9  12  12  12  12  12  12  12  12  12  12  12  
 LCS     407       V     4    7   22       C        0   0   0   1   1   2   5   7   9  11  12  12  12  12  12  12  12  12  12  12  
 LCS     408       D     4    7   22       C        0   0   0   1   1   5   6   8  10  12  12  12  12  12  12  12  12  12  12  12  
 LCS     409       L     4    7   22       C        0   0   0   1   1   5   6   8  11  12  12  12  12  12  12  12  12  12  12  12  
 LCS     410       S     3    6   22       C        0   0   0   3   3   4   7  10  11  12  12  12  12  12  12  12  12  12  12  12  
 LCS     411       D     3    6   22       C        0   0   0   1   1   1   1   3   4  10  11  12  12  12  12  12  12  12  12  12  
 LCS    BREAK 
 LCS TOTAL_SCORE (RMS CUTOFF   1.00):   0.22 
 
 NUMBER_OF_CA_Tg:  493      NUMBER_OF_CA_Pr:   64      PERCENT_OF_CA:  12.98  
 
GLOBAL_DISTANCE_TEST (the largest set of residues under DISTANCE_CUTOFF (using LCS results)): 
 GDT DISTANCE_CUTOFF     0.50    1.00    1.50    2.00    2.50    3.00    3.50    4.00    4.50    5.00    5.50    6.00    6.50    7.00    7.50    8.00    8.50    9.00    9.50   10.00  
 GDT NUMBER_OF_CA_max       9      20      33      39      47      49      52      54      56      60      61      63      63      64      64      64      64      64      64      64  
 GDT PERCENT_OF_CA_Pr   14.06   31.25   51.56   60.94   73.44   76.56   81.25   84.38   87.50   93.75   95.31   98.44   98.44  100.00  100.00  100.00  100.00  100.00  100.00  100.00 
 GDT PERCENT_OF_CA_Tg    1.83    4.06    6.69    7.91    9.53    9.94   10.55   10.95   11.36   12.17   12.37   12.78   12.78   12.98   12.98   12.98   12.98   12.98   12.98   12.98 
 GDT FRAGMENT: Beg-End 376-400 340-402 340-401 339-402 338-402 338-402 338-402 338-402 338-410 338-410 338-410 338-411 338-411 338-411 338-411 338-411 338-411 338-411 338-411 338-411 
 GDT RMS_LOCAL           0.31    0.74    1.06    1.30    1.52    1.63    1.82    1.98    2.13    2.45    2.53    2.71    2.71    2.83    2.83    2.83    2.83    2.83    2.83    2.83 
 GDT RMS_ALL_CA          3.73    3.00    3.19    3.05    3.02    2.97    2.94    2.94    2.89    2.84    2.83    2.83    2.83    2.83    2.83    2.83    2.83    2.83    2.83    2.83 
 
 
 TEST (CA)  RMS =   2.83               (Number of atoms:   64) 
 
 (CA)  RMS:                   CRMSCA         NP     PP     TN 
     ALL . . . . . . . . . .    2.83         64    13.0   493     CRMSCA  
     CRN = ALL/NP  . . . . .    0.0442                            CRMSCA  
     SECONDARY STRUCTURE . .    1.69         34    13.7   249     CRMSCA  
     SURFACE . . . . . . . .    3.24         30    12.1   248     CRMSCA  
     BURIED  . . . . . . . .    2.40         34    13.9   245     CRMSCA  
 (MC)  RMS:                   CRMSMC         NP     PP     TN 
     ALL . . . . . . . . . .    3.01        314    13.0  2415     CRMSMC  
     SECONDARY STRUCTURE . .    1.76        167    13.6  1230     CRMSMC  
     SURFACE . . . . . . . .    3.55        147    12.2  1209     CRMSMC  
     BURIED  . . . . . . . .    2.45        167    13.8  1206     CRMSMC  
 (SC)  RMS:                   CRMSSC         NP     PP     TN 
     ALL . . . . . . . . . .    3.31         58     3.6  1617     CRMSSC  
     RELIABLE SIDE CHAINS  .    3.31         58     4.4  1329     CRMSSC  
     SECONDARY STRUCTURE . .    1.85         31     3.5   891     CRMSSC  
     SURFACE . . . . . . . .    3.75         27     3.1   869     CRMSSC  
     BURIED  . . . . . . . .    2.86         31     4.1   748     CRMSSC  
 (ALL) RMS:                   CRMSALL        NP     PP     TN 
     ALL . . . . . . . . . .    3.01        314     8.7  3589     CRMSALL 
     SECONDARY STRUCTURE . .    1.76        167     8.9  1887     CRMSALL 
     SURFACE . . . . . . . .    3.55        147     7.9  1861     CRMSALL 
     BURIED  . . . . . . . .    2.45        167     9.7  1728     CRMSALL 
 
Accuracy of estimates of atomic coordinate errors: model <-> target 
 
 (CA)  ERRORS:                  |D-E|   |D-E|/|D+E|   SR(D,E)    NP     PP     TN 
     ALL . . . . . . . . . .    2.416      1.000       0.500     64    13.0   493     ERRCA  
     SECONDARY STRUCTURE . .    1.565      1.000       0.500     34    13.7   249     ERRCA  
     SURFACE . . . . . . . .    2.865      1.000       0.500     30    12.1   248     ERRCA  
     BURIED  . . . . . . . .    2.020      1.000       0.500     34    13.9   245     ERRCA  
 (MC)  ERRORS:                  |D-E|   |D-E|/|D+E|   SR(D,E)    NP     PP     TN 
     ALL . . . . . . . . . .    2.529      1.000       0.500    314    13.0  2415     ERRMC  
     SECONDARY STRUCTURE . .    1.628      1.000       0.500    167    13.6  1230     ERRMC  
     SURFACE . . . . . . . .    3.059      1.000       0.500    147    12.2  1209     ERRMC  
     BURIED  . . . . . . . .    2.063      1.000       0.500    167    13.8  1206     ERRMC  
 (SC)  ERRORS:                  |D-E|   |D-E|/|D+E|   SR(D,E)    NP     PP     TN 
     ALL . . . . . . . . . .    2.747      1.000       0.500     58     3.6  1617     ERRSC  
     RELIABLE SIDE CHAINS  .    2.747      1.000       0.500     58     4.4  1329     ERRSC  
     SECONDARY STRUCTURE . .    1.698      1.000       0.500     31     3.5   891     ERRSC  
     SURFACE . . . . . . . .    3.271      1.000       0.500     27     3.1   869     ERRSC  
     BURIED  . . . . . . . .    2.290      1.000       0.500     31     4.1   748     ERRSC  
 (ALL) ERRORS:                  |D-E|   |D-E|/|D+E|   SR(D,E)    NP     PP     TN 
     ALL . . . . . . . . . .    2.529      1.000       0.500    314     8.7  3589     ERRALL 
     SECONDARY STRUCTURE . .    1.628      1.000       0.500    167     8.9  1887     ERRALL 
     SURFACE . . . . . . . .    3.059      1.000       0.500    147     7.9  1861     ERRALL 
     BURIED  . . . . . . . .    2.063      1.000       0.500    167     9.7  1728     ERRALL 
 
 
 
DISTANCES: Percent of total atoms where distance (target <-> model) in global 
           superposition is less than: 1 , 2 , 3 , 5 , 10 Angstroms 
            D < 1     D < 2     D < 3     D < 5    D < 10      NP      TN 
CA  (N)         9        32        48        60        64      64     493   DISTCA 
CA  (P)      1.83      6.49      9.74     12.17     12.98             493   DISTCA 
CA  (RMS)    0.78      1.43      1.79      2.45      2.83                   DISTCA 
 
ALL (N)        29       155       231       284       313     314    3589   DISTALL 
ALL (P)      0.81      4.32      6.44      7.91      8.72            3589   DISTALL 
ALL (RMS)    0.71      1.45      1.80      2.39      2.96                   DISTALL 
 
 
 
 
END of the results output 
