
PFRMAT ABF1
TARGET T0002
AUTHOR 9476-8839-1393 Jeremy Webber, Ruben Abagyan,
AUTHOR 9476-8839-1393 Abagyan Lab, Skirball Institute
AUTHOR 9476-8839-1393 NYU Medical Center, NY, NY 10016
REMARK==========================================================
REMARK The N-terminal 327 amino acids is predicted by comparative
REMARK modeling using tryptophan synthase (submitted seperately)
REMARK It is only the last 187 amino acids that are predicted 
REMARK ab initio.  This is the first of two predictions submitted
REMARK for this target from our lab.
REMARK
REMARK Searches of the c-terminal 187 residues (and family members)
REMARK over the entire pdb with our multilink procedure revealed 
REMARK an alignment of the final 112 residues with one domain of 
REMARK the pdb structure 1fab.
REMARK 
REMARK This left a 75 amino acid length (328 to 404) unaccounted 
REMARK for. Another multilink search revealed alignments of that 
REMARK region to 1tad.
REMARK 
REMARK==========================================================
# TARGET T0002 sequence:
# MADSQPLSGAPEGAEYLRAVLRAPVYEAAQVTPLQKMEKLSSRLDNVILV
# KREDRQPVHSFKLRGAYAMMAGLTEEQKAHGVITASAGNHAQGVAFSSAR
# LGVKALIVMPTATADIKVDAVRGFGGEVLLHGANFDEAKAKAIELSQQQG
# FTWVPPFDHPMVIAGQGTLALELLQQDAHLDRVFVPVGGGGLAAGVAVLI
# KQLMPQIKVIAVEAEDSACLKAALDAGHPVDLPRVGLFAEGVAVKRIGDE
# TFRLCQEYLDDIITVDSDAICAAMKDLFEDVRAVAEPSGALALAGMKKYI
# ALHNIRGERLAHILSGANVNFHGLRYVSERCELGEQREALLAVTIPEEKG
# SFLKFCQLLGGRSVTEFNYRFADAKNACIFVGVRLSRGLEERKEILQMLN
# DGGYSVVDLSDDEMAKLHVRYMVGGRPSHPLQERLYSFEFPESPGALLRF
# LNTLGTYWNISLFHYRSHGTDYGRVLAAFELGDHEPDFETRLNELGYDCH
# DETNNPAFRFFLAG
BEGDAT 1.1  1  1.00
SS 514
M C  0.80
A C  0.80
D C  0.80
S C  0.80
Q C  0.80
P C  0.80
L H  1.00
S H  1.00
G H  1.00
A H  1.00
P H  1.00
E H  1.00
G H  0.80
A H  0.80
E H  1.00
Y H  1.00
L H  1.00
R H  1.00
A H  1.00
V H  1.00
L H  1.00
R H  1.00
A H  1.00
P H  1.00
V H  1.00
Y H  1.00
E H  0.80
A H  0.80
A H  0.80
Q H  0.80
V C  1.00
T C  1.00
P E  1.00
L E  1.00
Q E  1.00
K E  1.00
M E  1.00
E C  1.00
K C  1.00
L C  1.00
S C  1.00
S C  1.00
R C  1.00
L C  1.00
D C  1.00
N E  1.00
V E  1.00
I E  1.00
L E  1.00
V E  1.00
K E  1.00
R E  1.00
E C  1.00
D C  1.00
R C  1.00
Q C  1.00
P C  1.00
V C  1.00
H C  1.00
S C  1.00
F C  1.00
K H  1.00
L H  1.00
R H  1.00
G H  1.00
A H  1.00
Y H  1.00
A H  1.00
M H  1.00
M H  1.00
A H  1.00
G H  1.00
L C  1.00
T C  1.00
E C  1.00
E C  1.00
Q C  1.00
K C  1.00
A E  1.00
H E  1.00
G E  1.00
V E  1.00
I E  1.00
T E  1.00
A E  1.00
S C  1.00
A C  1.00
G C  1.00
N C  1.00
H H  1.00
A H  1.00
Q H  1.00
G H  1.00
V H  1.00
A H  1.00
F H  1.00
S H  1.00
S H  1.00
A H  1.00
R C  1.00
L C  1.00
G C  1.00
V E  1.00
K E  1.00
A E  1.00
L E  1.00
I E  1.00
V E  1.00
M E  1.00
P C  1.00
T C  1.00
A C  1.00
T C  1.00
A C  1.00
D C  1.00
I C  1.00
K H  0.80
V H  0.80
D H  0.80
A H  1.00
V H  1.00
R H  1.00
G C  1.00
F C  1.00
G C  1.00
G E  1.00
E E  1.00
V E  1.00
L C  1.00
L C  1.00
H C  1.00
G C  1.00
A C  1.00
N C  1.00
F H  1.00
D H  1.00
E H  1.00
A H  1.00
K H  1.00
A H  1.00
K H  1.00
A H  1.00
I H  1.00
E H  0.80
L H  0.80
S E  1.00
Q C  0.80
Q C  0.80
Q C  0.80
G C  0.80
F C  1.00
T C  1.00
W C  1.00
V C  1.00
P C  1.00
P H  0.80
F H  0.80
D H  0.80
H H  0.80
P H  1.00
M H  1.00
V C  0.80
I C  0.60
A C  0.60
G C  0.60
Q C  0.80
G H  1.00
T H  1.00
L H  1.00
A H  1.00
L H  1.00
E H  1.00
L H  1.00
L H  1.00
Q H  1.00
Q H  1.00
D H  0.80
A H  0.80
H H  0.80
L H  0.80
D E  1.00
R E  1.00
V E  1.00
F E  1.00
V E  1.00
P E  1.00
V E  1.00
G C  1.00
G C  1.00
G C  1.00
G H  1.00
L H  1.00
A H  1.00
A H  1.00
G H  1.00
V H  0.90
A H  0.90
V H  0.90
L H  1.00
I H  1.00
K C  0.80
Q C  0.80
L C  0.80
M C  1.00
P C  1.00
Q E  0.80
I E  0.80
K E  0.90
V E  0.90
I E  1.00
A E  1.00
V E  1.00
E E  1.00
A E  1.00
E C  0.80
D C  1.00
S C  1.00
A C  1.00
C C  1.00
L C  1.00
K C  1.00
A C  1.00
A C  1.00
L C  1.00
D C  1.00
A C  1.00
G C  1.00
H C  1.00
P C  1.00
V C  1.00
D C  1.00
L C  1.00
P C  1.00
R C  1.00
V C  1.00
G C  1.00
L C  1.00
F C  1.00
A C  1.00
E C  1.00
G C  1.00
V C  1.00
A C  1.00
V C  1.00
K C  1.00
R C  1.00
I C  1.00
G C  1.00
D C  0.70
E C  0.80
T C  0.80
F C  0.80
R C  0.80
L C  0.80
C C  0.80
Q C  0.80
E H  1.00
Y H  0.80
L H  0.80
D H  0.80
D H  0.80
I H  0.80
I H  0.80
T C  0.80
V C  0.80
D E  0.80
S E  0.80
D E  0.80
A E  0.80
I C  0.80
C H  1.00
A H  1.00
A H  1.00
M H  1.00
K H  1.00
D H  1.00
L H  1.00
F H  1.00
E H  1.00
D C  1.00
V C  1.00
R C  1.00
A C  1.00
V C  1.00
A H  0.80
E H  0.80
P H  1.00
S H  1.00
G H  1.00
A H  1.00
L H  1.00
A H  1.00
L H  1.00
A H  1.00
G H  1.00
M H  1.00
K H  1.00
K H  1.00
Y H  1.00
I H  1.00
A C  0.80
L C  0.80
H C  1.00
N E  0.80
I E  0.80
R E  0.80
G E  1.00
E E  1.00
R E  1.00
L E  1.00
A C  0.80
H C  0.80
I C  0.80
L C  1.00
S C  1.00
G C  1.00
A H  0.80
N H  0.80
V H  1.00
N H  1.00
F H  1.00
H H  1.00
G H  1.00
L H  1.00
R H  1.00
Y H  1.00
V H  1.00
S H  0.80
E H  0.80
R H  0.80
C H  0.25
E C  0.25
L C  0.25
G C  0.25
E C  0.25
Q C  0.25
R H  0.15
E H  0.25
A H  0.25
L H  0.15
L H  0.25
A H  0.25
V H  0.25
T H  0.25
I H  0.25
P H  0.25
E H  0.25
E H  0.25
K H  0.25
G H  0.25
S H  0.25
F H  0.25
L H  0.25
K H  0.25
F H  0.25
C H  0.25
Q H  0.25
L H  0.25
L H  0.25
G H  0.25
G H  0.25
R H  0.25
S H  0.25
V H  0.25
T C  0.25
E C  0.25
F C  0.25
N C  0.25
Y C  0.25
R C  0.15
F C  0.15
A C  0.25
D H  0.25
A H  0.25
K H  0.25
N H  0.25
A H  0.25
C H  0.25
I H  0.25
F H  0.25
V H  0.25
G H  0.25
V H  0.25
R C  0.25
L C  0.25
S C  0.15
R C  0.15
G C  0.25
L C  0.25
E C  0.25
E C  0.25
R C  0.25
K H  0.25
E H  0.25
I H  0.25
L H  0.25
Q H  0.25
M H  0.25
L H  0.25
N H  0.25
D H  0.25
G C  0.15
G C  0.25
Y C  0.25
S C  0.25
V E  0.25
V E  0.25
D E  0.25
L E  0.25
S C  0.25
D C  0.25
D E  0.25
E E  0.25
M E  0.25
A E  0.25
K C  0.25
L C  0.25
H C  0.25
V C  0.25
R C  0.25
Y E  0.25
M E  0.25
V E  0.25
G E  0.25
G E  0.25
R E  0.25
P E  0.25
S C  0.25
H C  0.25
P C  0.25
L C  0.25
Q C  0.15
E C  0.15
R E  0.25
L E  0.25
Y E  0.25
S E  0.25
F E  0.25
E E  0.25
F C  0.25
P C  0.25
E C  0.25
S C  0.25
P C  0.25
G E  0.25
A E  0.25
L E  0.25
L C  0.25
R E  0.25
F E  0.25
L C  0.25
N C  0.25
T C  0.25
L C  0.25
G E  0.25
T E  0.25
Y C  0.25
W C  0.25
N C  0.25
I C  0.25
S C  0.25
L C  0.25
F E  0.25
H E  0.25
Y E  0.25
R E  0.25
S E  0.25
H E  0.25
G C  0.25
T C  0.25
D E  0.25
Y E  0.25
G E  0.25
R E  0.25
V E  0.25
L E  0.25
A C  0.25
A C  0.25
F C  0.25
E C  0.25
L H  0.25
G H  0.25
D H  0.25
H C  0.25
E C  0.25
P E  0.25
D E  0.25
F E  0.25
E E  0.25
T E  0.25
R E  0.25
L C  0.25
N C  0.25
E C  0.25
L C  0.25
G C  0.25
Y C  0.25
D C  0.25
C C  0.25
H C  0.25
D C  0.25
E C  0.25
T E  0.25
N E  0.25
N E  0.25
P E  0.25
A E  0.25
F C  0.25
R C  0.25
F C  0.25
F C  0.25
L C  0.25
A C  0.25
G C  0.25
ENDDAT 1.1
END
