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Critical Assessment of Techniques for Protein Structure PredictionContinuous CASP Model Refinement ExperimentCASPR
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Registration is closed | Submission facility is closed | Model Viewer |
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To increase discussion and hopefully progress as well, we are conducting a 'between-CASP's refinement experiment, using some of the models submitted in CASP6 as starting structures, and asking members for the CASP and molecular dynamics communities to test methods of refining these. The goal is to use any method you like to refine these approximate structures closer to experiment. These will not be blind predictions. We hope that any apparently successful methods will be also be used in CASP7, allowing rigorous evaluation. The idea here is to allow testing and development of methods outside of the hectic atmosphere of CASP proper, and in particular, to encourage discussion of the issues and new ideas.
Four CASP6 models were originally selected as refinement targets for this experiment. Additional 3 targets were added to the experiment on March 1 (details - in the Targets column of the table above).
The experiment is organized as follows. Using this web site you may
In parallel, we encourage discussion on FORCASP of all aspects of this experiment - potential new methods, criticism of existing methods, suggestions for improving the experiment, analysis of the results once they become available.
Let us know if you have any questions. We would like to involve as many of the community as possible. So, please let your colleagues working in the relevant area know about the experiment.
Please address any questions or queries to casp@predictioncenter.org
CASP organizers 1/31/2006
Last updated 3/1/2006
Protein Structure Prediction Center