####################################################### # # # LGA # # --------------- # # # # Local-Global Alignment # # A Method for Finding 3-D Similarities # # in Protein Structures # # # # ------------ 09/2011 # # # # Adam Zemla (adamz@llnl.gov) # # Lawrence Livermore National Laboratory, CA # # # ####################################################### # Molecule1: number of CA atoms 44 ( 344), selected 44 , name T0953s2TS324_5-D1 # Molecule2: number of CA atoms 44 ( 344), selected 44 , name T0953s2-D1.pdb # PARAMETERS: -3 -ie -o1 -sda -d:4 -gdc_sc -swap T0953s2TS324_5-D1.lga # FIXED Atom-Atom correspondence # GDT and LCS analysis LCS - RMSD CUTOFF 5.00 length segment l_RMS g_RMS LONGEST_CONTINUOUS_SEGMENT: 20 6 - 25 4.87 12.46 LONGEST_CONTINUOUS_SEGMENT: 20 7 - 26 4.88 11.97 LCS_AVERAGE: 41.43 LCS - RMSD CUTOFF 2.00 length segment l_RMS g_RMS LONGEST_CONTINUOUS_SEGMENT: 9 24 - 32 2.00 13.91 LCS_AVERAGE: 15.96 LCS - RMSD CUTOFF 1.00 length segment l_RMS g_RMS LONGEST_CONTINUOUS_SEGMENT: 6 27 - 32 0.98 13.21 LCS_AVERAGE: 10.18 LCS_GDT MOLECULE-1 MOLECULE-2 LCS_DETAILS GDT_DETAILS TOTAL NUMBER OF RESIDUE PAIRS: 44 LCS_GDT RESIDUE RESIDUE SEGMENT_SIZE GLOBAL DISTANCE TEST COLUMNS: number of residues under the threshold assigned to each residue pair LCS_GDT NAME NUMBER NAME NUMBER 1.0 2.0 5.0 0.5 1.0 1.5 2.0 2.5 3.0 3.5 4.0 4.5 5.0 5.5 6.0 6.5 7.0 7.5 8.0 8.5 9.0 9.5 10.0 LCS_GDT A 2 A 2 4 6 12 3 4 6 8 9 10 10 13 14 16 18 21 23 25 27 29 32 33 35 36 LCS_GDT V 3 V 3 4 6 12 3 4 6 8 8 9 11 12 14 16 18 21 23 25 27 29 30 33 34 36 LCS_GDT Q 4 Q 4 4 6 18 3 4 6 8 8 8 8 9 11 12 15 16 19 25 26 29 30 33 34 36 LCS_GDT G 5 G 5 4 6 19 3 4 6 8 8 8 8 9 11 13 15 16 19 20 20 22 26 31 31 34 LCS_GDT P 6 P 6 4 6 20 1 4 6 8 8 8 9 9 11 13 15 16 19 20 20 22 24 27 30 33 LCS_GDT W 7 W 7 4 6 20 3 4 5 6 7 8 9 10 12 14 15 16 19 21 23 26 32 33 35 36 LCS_GDT V 8 V 8 4 6 20 3 4 5 6 9 10 10 13 14 16 18 21 23 25 27 29 32 33 35 36 LCS_GDT G 9 G 9 4 6 20 3 4 5 6 9 10 11 14 14 16 18 21 23 25 27 29 32 33 35 36 LCS_GDT S 10 S 10 5 8 20 3 5 7 8 9 10 10 13 14 16 18 21 23 25 27 29 32 33 35 36 LCS_GDT S 11 S 11 5 8 20 4 5 7 8 8 10 11 14 14 16 16 18 21 25 27 29 32 33 35 36 LCS_GDT Y 12 Y 12 5 8 20 4 5 7 8 8 8 9 14 14 16 16 16 18 19 22 25 30 33 35 36 LCS_GDT V 13 V 13 5 8 20 4 5 7 8 8 8 11 14 14 16 17 20 23 25 27 29 32 33 35 36 LCS_GDT A 14 A 14 5 8 20 4 5 7 8 8 10 11 14 14 16 16 17 19 25 27 29 32 33 35 36 LCS_GDT E 15 E 15 5 8 20 4 4 7 8 8 10 11 14 14 16 16 17 18 19 19 21 22 29 31 34 LCS_GDT T 16 T 16 5 8 20 4 4 7 8 8 10 11 14 14 16 16 17 19 20 20 23 30 33 35 36 LCS_GDT G 17 G 17 5 8 20 3 4 6 8 8 10 11 14 14 16 18 21 23 25 27 29 32 33 35 36 LCS_GDT Q 18 Q 18 3 6 20 3 3 5 6 8 10 11 14 14 16 17 20 23 25 27 29 32 33 35 36 LCS_GDT N 19 N 19 3 6 20 3 4 4 6 8 10 11 14 14 16 18 21 23 25 27 29 32 33 35 36 LCS_GDT W 20 W 20 3 6 20 3 4 5 7 9 10 11 14 14 16 18 21 23 25 27 29 32 33 35 36 LCS_GDT A 21 A 21 3 5 20 3 4 6 7 9 10 11 14 14 16 17 17 19 23 27 29 32 33 35 36 LCS_GDT S 22 S 22 3 5 20 3 3 4 5 7 10 11 14 14 16 16 17 18 20 22 25 30 32 35 36 LCS_GDT L 23 L 23 3 4 20 3 3 4 4 4 10 11 14 14 16 16 17 18 23 24 29 32 33 35 36 LCS_GDT A 24 A 24 5 9 20 3 3 6 7 9 10 11 12 13 14 18 21 23 25 27 29 32 33 35 36 LCS_GDT A 25 A 25 5 9 20 3 4 6 7 9 10 11 12 14 16 18 21 23 25 27 29 32 33 35 36 LCS_GDT N 26 N 26 5 9 20 3 4 6 7 8 10 11 13 14 16 18 21 23 25 27 29 32 33 35 36 LCS_GDT E 27 E 27 6 9 18 3 4 6 7 9 10 11 13 14 16 18 21 23 25 27 29 32 33 35 36 LCS_GDT L 28 L 28 6 9 18 3 4 6 7 9 10 11 13 14 16 18 21 23 25 27 29 32 33 35 36 LCS_GDT R 29 R 29 6 9 18 3 4 6 7 9 10 11 13 14 16 18 21 23 25 27 29 32 33 35 36 LCS_GDT V 30 V 30 6 9 18 3 4 6 7 9 10 11 13 14 16 18 21 23 25 27 29 32 33 35 36 LCS_GDT T 31 T 31 6 9 18 3 4 6 7 9 10 11 13 14 16 18 21 23 25 27 29 32 33 35 36 LCS_GDT E 32 E 32 6 9 18 3 4 6 7 9 10 11 13 14 16 18 21 23 25 27 29 32 33 35 36 LCS_GDT R 33 R 33 3 6 18 2 3 5 6 8 9 9 10 14 16 18 21 23 25 27 29 32 33 35 36 LCS_GDT P 34 P 34 4 6 18 1 4 5 6 8 9 9 10 12 14 18 21 23 25 27 29 32 33 35 36 LCS_GDT F 35 F 35 4 6 18 3 4 5 6 8 9 9 10 12 14 14 17 23 25 27 29 32 33 35 36 LCS_GDT W 36 W 36 4 7 18 3 4 5 6 8 9 9 10 12 14 14 21 23 25 27 29 32 33 35 36 LCS_GDT I 37 I 37 4 7 18 3 4 6 8 8 9 9 10 12 14 14 15 17 20 23 28 30 32 34 36 LCS_GDT S 38 S 38 5 7 17 3 5 5 8 8 8 9 10 12 15 18 21 23 25 27 29 32 33 35 36 LCS_GDT S 39 S 39 5 7 16 3 5 6 8 8 8 9 10 12 14 14 14 19 25 27 29 32 33 35 36 LCS_GDT F 40 F 40 5 7 15 3 5 5 6 7 8 9 9 12 14 14 14 18 25 27 29 32 33 35 36 LCS_GDT I 41 I 41 5 7 15 3 5 5 6 8 8 9 10 11 14 16 19 22 25 27 29 32 33 35 36 LCS_GDT G 42 G 42 5 7 15 3 5 5 6 8 8 9 10 12 14 14 15 18 23 26 29 32 33 35 36 LCS_GDT R 43 R 43 4 7 15 3 3 4 5 7 8 9 9 12 14 14 14 14 16 19 19 22 26 28 31 LCS_GDT S 44 S 44 4 5 15 3 3 4 5 7 7 8 9 12 14 14 14 14 14 15 15 18 18 19 22 LCS_GDT K 45 K 45 4 5 15 3 3 4 4 5 6 7 9 12 14 14 14 14 14 14 15 15 16 17 18 LCS_AVERAGE LCS_A: 22.52 ( 10.18 15.96 41.43 ) GLOBAL_DISTANCE_TEST (summary information about detected largest sets of residues (represented by selected AToms) that can fit under specified thresholds) GDT DIST_CUTOFF 0.50 1.00 1.50 2.00 2.50 3.00 3.50 4.00 4.50 5.00 5.50 6.00 6.50 7.00 7.50 8.00 8.50 9.00 9.50 10.00 GDT NUMBER_AT 4 5 7 8 9 10 11 14 14 16 18 21 23 25 27 29 32 33 35 36 GDT PERCENT_AT 9.09 11.36 15.91 18.18 20.45 22.73 25.00 31.82 31.82 36.36 40.91 47.73 52.27 56.82 61.36 65.91 72.73 75.00 79.55 81.82 GDT RMS_LOCAL 0.19 0.60 1.35 1.23 1.78 1.95 2.25 2.85 2.85 3.29 3.89 4.47 4.66 4.89 5.27 5.52 6.12 6.10 6.52 6.54 GDT RMS_ALL_AT 25.71 24.33 24.46 19.76 13.82 13.84 13.06 14.84 14.84 14.55 10.06 9.99 9.90 10.01 9.52 9.56 9.14 9.41 9.14 9.38 # Checking swapping # possible swapping detected: Y 12 Y 12 # possible swapping detected: E 15 E 15 # possible swapping detected: E 27 E 27 # possible swapping detected: E 32 E 32 # possible swapping detected: F 35 F 35 # possible swapping detected: F 40 F 40 # Molecule1 Molecule2 DISTANCE Mis MC All Dist_max GDC_mc GDC_all Dist_at LGA A 2 A 2 19.072 0 0.066 0.060 19.600 0.000 0.000 - LGA V 3 V 3 19.127 0 0.129 0.185 19.742 0.000 0.000 19.208 LGA Q 4 Q 4 18.149 0 0.078 0.974 23.499 0.000 0.000 23.499 LGA G 5 G 5 17.178 0 0.141 0.141 18.335 0.000 0.000 - LGA P 6 P 6 15.280 0 0.638 0.535 18.796 0.000 0.000 17.062 LGA W 7 W 7 10.376 0 0.269 0.369 15.677 0.000 0.000 14.679 LGA V 8 V 8 5.875 0 0.658 0.698 7.218 1.818 1.818 4.294 LGA G 9 G 9 2.202 0 0.537 0.537 5.659 15.455 15.455 - LGA S 10 S 10 6.333 0 0.537 0.817 9.568 2.273 1.515 9.568 LGA S 11 S 11 1.489 0 0.336 0.314 4.593 42.727 33.333 4.593 LGA Y 12 Y 12 3.941 0 0.154 0.900 16.525 16.364 5.455 16.525 LGA V 13 V 13 3.975 0 0.429 0.523 7.755 18.636 10.649 7.532 LGA A 14 A 14 2.536 0 0.254 0.248 3.849 32.727 29.818 - LGA E 15 E 15 3.532 0 0.050 0.958 4.732 21.818 11.111 4.718 LGA T 16 T 16 1.348 0 0.406 0.902 5.202 62.273 41.039 5.202 LGA G 17 G 17 2.727 0 0.135 0.135 3.121 36.818 36.818 - LGA Q 18 Q 18 2.454 0 0.534 1.434 8.731 40.909 18.182 8.618 LGA N 19 N 19 2.816 0 0.728 1.226 6.710 37.273 20.000 4.207 LGA W 20 W 20 1.894 0 0.238 1.151 8.901 37.727 11.169 8.901 LGA A 21 A 21 3.709 0 0.540 0.510 6.339 28.636 22.909 - LGA S 22 S 22 2.297 0 0.029 0.597 5.379 48.182 33.939 5.379 LGA L 23 L 23 3.253 0 0.136 0.509 9.910 15.909 7.955 9.910 LGA A 24 A 24 8.476 0 0.477 0.467 11.840 0.000 0.000 - LGA A 25 A 25 10.663 0 0.289 0.328 14.959 0.000 0.000 - LGA N 26 N 26 14.293 0 0.148 1.035 18.653 0.000 0.000 10.865 LGA E 27 E 27 18.605 0 0.229 1.315 22.054 0.000 0.000 17.569 LGA L 28 L 28 20.360 0 0.636 0.695 21.890 0.000 0.000 17.092 LGA R 29 R 29 23.137 0 0.349 1.506 33.977 0.000 0.000 33.977 LGA V 30 V 30 19.322 0 0.194 0.364 20.299 0.000 0.000 15.831 LGA T 31 T 31 22.074 0 0.737 0.859 26.042 0.000 0.000 24.824 LGA E 32 E 32 22.677 0 0.361 1.030 26.434 0.000 0.000 26.434 LGA R 33 R 33 21.000 0 0.099 1.431 23.525 0.000 0.000 22.470 LGA P 34 P 34 18.933 0 0.246 0.478 21.018 0.000 0.000 20.050 LGA F 35 F 35 17.767 0 0.236 1.042 19.991 0.000 0.000 19.810 LGA W 36 W 36 15.572 0 0.187 0.220 18.070 0.000 0.000 12.163 LGA I 37 I 37 15.028 0 0.415 1.441 16.901 0.000 0.000 16.413 LGA S 38 S 38 14.122 0 0.332 0.288 15.691 0.000 0.000 15.067 LGA S 39 S 39 15.052 0 0.154 0.244 16.281 0.000 0.000 14.044 LGA F 40 F 40 14.057 0 0.242 0.783 16.596 0.000 0.000 16.589 LGA I 41 I 41 13.596 0 0.317 0.633 15.520 0.000 0.000 11.584 LGA G 42 G 42 15.838 0 0.606 0.606 20.354 0.000 0.000 - LGA R 43 R 43 20.627 0 0.328 0.956 25.044 0.000 0.000 25.044 LGA S 44 S 44 25.563 0 0.057 0.639 28.818 0.000 0.000 26.193 LGA K 45 K 45 32.044 0 0.689 0.774 36.563 0.000 0.000 36.563 # RMSD_GDC results: CA MC common percent ALL common percent GDC_mc GDC_all GDC_at NUMBER_OF_ATOMS_AA: 44 176 176 100.00 344 344 100.00 44 35 SUMMARY(RMSD_GDC): 8.958 9.033 10.655 10.444 6.845 0.416 #CA N1 N2 DIST N RMSD GDT_TS LGA_S3 LGA_Q SUMMARY(GDT) 44 44 4.0 14 2.85 31.818 27.176 0.475 LGA_LOCAL RMSD: 2.850 Number of atoms: 14 under DIST: 4.00 LGA_ASGN_ATOMS RMSD: 14.842 Number of assigned atoms: 44 Std_ASGN_ATOMS RMSD: 8.958 Standard rmsd on all 44 assigned CA atoms Unitary ROTATION matrix and the SHIFT vector superimpose molecules (1=>2) X_new = -0.218998 * X + 0.294309 * Y + 0.930281 * Z + -8.761639 Y_new = 0.470936 * X + 0.866903 * Y + -0.163395 * Z + 50.891266 Z_new = -0.854552 * X + 0.402320 * Y + -0.328451 * Z + -24.563467 Euler angles from the ROTATION matrix. Conventions XYZ and ZXZ: Phi Theta Psi [DEG: Phi Theta Psi ] XYZ: 2.006076 1.024687 2.255453 [DEG: 114.9397 58.7103 129.2280 ] ZXZ: 1.396929 1.905459 -1.130784 [DEG: 80.0381 109.1748 -64.7891 ] # END of job REMARK ---------------------------------------------------------- REMARK Citing LGA: REMARK Zemla A., LGA - a Method for Finding 3D Similarities in REMARK Protein Structures, Nucleic Acids Research, 2003, V. 31, REMARK No. 13, pp. 3370-3374. REMARK ---------------------------------------------------------- REMARK Superimposed MOLECULES (1=>2) Output: 1 molecule REMARK 1: T0953s2TS324_5-D1 REMARK 2: T0953s2-D1.pdb REMARK GDT and LCS analysis REMARK FIXED Atom-Atom correspondence REMARK LGA parameters: -3 -ie -o1 -sda -d:4 -gdc_sc -swap T0953s2TS324_5-D1.lga REMARK #CA N1 N2 DIST N RMSD LGA_S3 RMSD_global REMARK SUMMARY: 44 44 4.0 14 2.85 27.176 8.96 REMARK ---------------------------------------------------------- MOLECULE T0953s2TS324_5-D1 PFRMAT TS TARGET T0953s2 MODEL 5 PARENT 4peuA ATOM 12 N ALA 2 -5.368 44.693 10.649 1.00 11.13 N ATOM 14 CA ALA 2 -5.817 45.191 9.347 1.00 11.13 C ATOM 15 CB ALA 2 -4.733 44.966 8.281 1.00 11.13 C ATOM 16 C ALA 2 -7.056 44.364 9.028 1.00 11.13 C ATOM 17 O ALA 2 -7.234 43.289 9.618 1.00 11.13 O ATOM 18 N VAL 3 -7.908 44.844 8.111 1.00 11.42 N ATOM 20 CA VAL 3 -9.114 44.091 7.728 1.00 11.42 C ATOM 21 CB VAL 3 -10.221 44.953 7.047 1.00 11.42 C ATOM 22 CG1 VAL 3 -11.493 44.116 6.844 1.00 11.42 C ATOM 23 CG2 VAL 3 -10.541 46.187 7.890 1.00 11.42 C ATOM 24 C VAL 3 -8.385 43.212 6.724 1.00 11.42 C ATOM 25 O VAL 3 -7.744 43.689 5.771 1.00 11.42 O ATOM 26 N GLN 4 -8.455 41.916 7.013 1.00 10.26 N ATOM 28 CA GLN 4 -7.729 40.910 6.271 1.00 10.26 C ATOM 29 CB GLN 4 -7.038 39.916 7.237 1.00 10.26 C ATOM 30 CG GLN 4 -7.949 39.108 8.228 1.00 10.26 C ATOM 31 CD GLN 4 -8.325 37.716 7.721 1.00 10.26 C ATOM 32 OE1 GLN 4 -9.429 37.505 7.218 1.00 10.26 O ATOM 33 NE2 GLN 4 -7.404 36.767 7.854 1.00 10.26 N ATOM 36 C GLN 4 -8.514 40.192 5.196 1.00 10.26 C ATOM 37 O GLN 4 -9.729 39.987 5.273 1.00 10.26 O ATOM 38 N GLY 5 -7.723 39.824 4.207 1.00 9.06 N ATOM 40 CA GLY 5 -8.126 39.177 2.989 1.00 9.06 C ATOM 41 C GLY 5 -7.379 37.890 2.828 1.00 9.06 C ATOM 42 O GLY 5 -6.958 37.293 3.828 1.00 9.06 O ATOM 43 N PRO 6 -7.244 37.408 1.572 1.00 9.29 N ATOM 44 CD PRO 6 -7.855 38.050 0.388 1.00 9.29 C ATOM 45 CA PRO 6 -6.567 36.182 1.156 1.00 9.29 C ATOM 46 CB PRO 6 -6.666 36.232 -0.373 1.00 9.29 C ATOM 47 CG PRO 6 -6.906 37.677 -0.687 1.00 9.29 C ATOM 48 C PRO 6 -5.120 36.104 1.655 1.00 9.29 C ATOM 49 O PRO 6 -4.759 36.778 2.630 1.00 9.29 O ATOM 50 N TRP 7 -4.296 35.320 0.976 1.00 8.17 N ATOM 52 CA TRP 7 -2.967 35.047 1.468 1.00 8.17 C ATOM 53 CB TRP 7 -2.615 33.615 1.062 1.00 8.17 C ATOM 54 CG TRP 7 -3.759 32.600 1.254 1.00 8.17 C ATOM 55 CD2 TRP 7 -4.169 31.945 2.478 1.00 8.17 C ATOM 56 CE2 TRP 7 -5.245 31.072 2.144 1.00 8.17 C ATOM 57 CE3 TRP 7 -3.736 32.010 3.823 1.00 8.17 C ATOM 58 CD1 TRP 7 -4.584 32.102 0.270 1.00 8.17 C ATOM 59 NE1 TRP 7 -5.469 31.193 0.798 1.00 8.17 N ATOM 61 CZ2 TRP 7 -5.898 30.264 3.106 1.00 8.17 C ATOM 62 CZ3 TRP 7 -4.389 31.202 4.788 1.00 8.17 C ATOM 63 CH2 TRP 7 -5.461 30.343 4.416 1.00 8.17 C ATOM 64 C TRP 7 -1.781 35.950 1.204 1.00 8.17 C ATOM 65 O TRP 7 -1.455 36.317 0.069 1.00 8.17 O ATOM 66 N VAL 8 -1.249 36.393 2.350 1.00 7.24 N ATOM 68 CA VAL 8 -0.052 37.219 2.488 1.00 7.24 C ATOM 69 CB VAL 8 -0.314 38.622 3.140 1.00 7.24 C ATOM 70 CG1 VAL 8 0.988 39.425 3.252 1.00 7.24 C ATOM 71 CG2 VAL 8 -1.341 39.407 2.326 1.00 7.24 C ATOM 72 C VAL 8 0.723 36.333 3.438 1.00 7.24 C ATOM 73 O VAL 8 0.354 36.180 4.614 1.00 7.24 O ATOM 74 N GLY 9 1.759 35.688 2.917 1.00 8.68 N ATOM 76 CA GLY 9 2.513 34.824 3.786 1.00 8.68 C ATOM 77 C GLY 9 3.431 35.633 4.663 1.00 8.68 C ATOM 78 O GLY 9 4.172 36.520 4.225 1.00 8.68 O ATOM 79 N SER 10 3.313 35.284 5.938 1.00 10.08 N ATOM 81 CA SER 10 4.075 35.797 7.061 1.00 10.08 C ATOM 82 CB SER 10 3.113 36.264 8.167 1.00 10.08 C ATOM 83 OG SER 10 3.732 37.205 9.025 1.00 10.08 O ATOM 85 C SER 10 4.660 34.401 7.309 1.00 10.08 C ATOM 86 O SER 10 4.260 33.691 8.245 1.00 10.08 O ATOM 87 N SER 11 5.604 34.019 6.432 1.00 10.79 N ATOM 89 CA SER 11 6.212 32.681 6.444 1.00 10.79 C ATOM 90 OG SER 11 7.281 31.030 4.973 1.00 10.79 O ATOM 92 C SER 11 7.341 32.605 7.466 1.00 10.79 C ATOM 93 O SER 11 8.253 31.772 7.369 1.00 10.79 O ATOM 94 CB SER 11 6.723 32.332 5.037 1.00 10.79 C ATOM 95 N TYR 12 7.211 33.465 8.481 1.00 12.13 N ATOM 97 CA TYR 12 8.111 33.493 9.621 1.00 12.13 C ATOM 98 CB TYR 12 8.552 34.950 9.886 1.00 12.13 C ATOM 99 CG TYR 12 9.668 35.165 10.910 1.00 12.13 C ATOM 100 CD1 TYR 12 11.029 35.191 10.515 1.00 12.13 C ATOM 101 CE1 TYR 12 12.068 35.427 11.459 1.00 12.13 C ATOM 102 CD2 TYR 12 9.374 35.383 12.280 1.00 12.13 C ATOM 103 CE2 TYR 12 10.407 35.619 13.230 1.00 12.13 C ATOM 104 CZ TYR 12 11.746 35.639 12.808 1.00 12.13 C ATOM 105 OH TYR 12 12.750 35.868 13.722 1.00 12.13 O ATOM 107 C TYR 12 7.175 33.017 10.727 1.00 12.13 C ATOM 108 O TYR 12 7.600 32.821 11.874 1.00 12.13 O ATOM 109 N VAL 13 5.902 32.800 10.352 1.00 12.24 N ATOM 111 CA VAL 13 4.916 32.278 11.296 1.00 12.24 C ATOM 112 CB VAL 13 3.767 33.373 11.562 1.00 12.24 C ATOM 113 CG1 VAL 13 2.962 33.045 12.806 1.00 12.24 C ATOM 114 CG2 VAL 13 4.351 34.784 11.698 1.00 12.24 C ATOM 115 C VAL 13 4.316 31.002 10.650 1.00 12.24 C ATOM 116 O VAL 13 3.090 30.792 10.707 1.00 12.24 O ATOM 117 N ALA 14 5.169 30.089 10.152 1.00 12.05 N ATOM 119 CA ALA 14 4.635 28.810 9.666 1.00 12.05 C ATOM 120 CB ALA 14 5.158 28.524 8.262 1.00 12.05 C ATOM 121 C ALA 14 5.180 27.780 10.658 1.00 12.05 C ATOM 122 O ALA 14 5.067 26.562 10.453 1.00 12.05 O ATOM 123 N GLU 15 5.716 28.313 11.762 1.00 14.53 N ATOM 125 CA GLU 15 6.273 27.543 12.868 1.00 14.53 C ATOM 126 CB GLU 15 7.791 27.802 12.995 1.00 14.53 C ATOM 127 CG GLU 15 8.272 29.258 12.883 1.00 14.53 C ATOM 128 CD GLU 15 9.776 29.390 13.023 1.00 14.53 C ATOM 129 OE1 GLU 15 10.256 29.564 14.163 1.00 14.53 O ATOM 130 OE2 GLU 15 10.479 29.323 11.992 1.00 14.53 O ATOM 131 C GLU 15 5.563 27.749 14.204 1.00 14.53 C ATOM 132 O GLU 15 5.522 26.852 15.048 1.00 14.53 O ATOM 133 N THR 16 4.970 28.942 14.335 1.00 14.89 N ATOM 135 CA THR 16 4.279 29.421 15.542 1.00 14.89 C ATOM 136 CB THR 16 4.876 30.808 15.967 1.00 14.89 C ATOM 137 OG1 THR 16 6.300 30.785 15.801 1.00 14.89 O ATOM 139 CG2 THR 16 4.570 31.116 17.422 1.00 14.89 C ATOM 140 C THR 16 2.767 29.530 15.336 1.00 14.89 C ATOM 141 O THR 16 2.201 30.633 15.394 1.00 14.89 O ATOM 142 N GLY 17 2.083 28.393 15.226 1.00 14.87 N ATOM 144 CA GLY 17 0.657 28.518 14.986 1.00 14.87 C ATOM 145 C GLY 17 0.260 28.045 13.603 1.00 14.87 C ATOM 146 O GLY 17 -0.713 28.562 13.044 1.00 14.87 O ATOM 147 N GLN 18 0.983 27.041 13.090 1.00 14.80 N ATOM 149 CA GLN 18 0.848 26.498 11.722 1.00 14.80 C ATOM 150 CB GLN 18 1.945 25.441 11.516 1.00 14.80 C ATOM 151 CG GLN 18 1.954 24.274 12.535 1.00 14.80 C ATOM 152 CD GLN 18 3.063 23.276 12.267 1.00 14.80 C ATOM 153 OE1 GLN 18 4.160 23.387 12.814 1.00 14.80 O ATOM 154 NE2 GLN 18 2.783 22.292 11.419 1.00 14.80 N ATOM 157 C GLN 18 -0.499 25.897 11.273 1.00 14.80 C ATOM 158 O GLN 18 -0.569 24.949 10.474 1.00 14.80 O ATOM 159 N ASN 19 -1.550 26.557 11.746 1.00 14.40 N ATOM 161 CA ASN 19 -2.941 26.297 11.420 1.00 14.40 C ATOM 162 CB ASN 19 -3.758 26.146 12.701 1.00 14.40 C ATOM 163 CG ASN 19 -3.194 25.081 13.628 1.00 14.40 C ATOM 164 OD1 ASN 19 -3.571 23.909 13.551 1.00 14.40 O ATOM 165 ND2 ASN 19 -2.300 25.487 14.527 1.00 14.40 N ATOM 168 C ASN 19 -3.160 27.644 10.736 1.00 14.40 C ATOM 169 O ASN 19 -2.788 28.683 11.300 1.00 14.40 O ATOM 170 N TRP 20 -3.764 27.646 9.551 1.00 13.40 N ATOM 172 CA TRP 20 -3.946 28.881 8.782 1.00 13.40 C ATOM 173 CB TRP 20 -4.145 28.522 7.300 1.00 13.40 C ATOM 174 CG TRP 20 -3.056 27.593 6.703 1.00 13.40 C ATOM 175 CD2 TRP 20 -3.029 26.146 6.711 1.00 13.40 C ATOM 176 CE2 TRP 20 -1.857 25.747 6.005 1.00 13.40 C ATOM 177 CE3 TRP 20 -3.878 25.148 7.243 1.00 13.40 C ATOM 178 CD1 TRP 20 -1.929 27.984 6.013 1.00 13.40 C ATOM 179 NE1 TRP 20 -1.217 26.886 5.597 1.00 13.40 N ATOM 181 CZ2 TRP 20 -1.507 24.387 5.816 1.00 13.40 C ATOM 182 CZ3 TRP 20 -3.530 23.787 7.054 1.00 13.40 C ATOM 183 CH2 TRP 20 -2.351 23.427 6.344 1.00 13.40 C ATOM 184 C TRP 20 -5.077 29.738 9.386 1.00 13.40 C ATOM 185 O TRP 20 -6.223 29.753 8.936 1.00 13.40 O ATOM 186 N ALA 21 -4.718 30.227 10.575 1.00 12.50 N ATOM 188 CA ALA 21 -5.471 31.071 11.507 1.00 12.50 C ATOM 189 CB ALA 21 -5.343 30.497 12.908 1.00 12.50 C ATOM 190 C ALA 21 -4.948 32.504 11.521 1.00 12.50 C ATOM 191 O ALA 21 -4.214 32.790 12.470 1.00 12.50 O ATOM 192 N SER 22 -5.308 33.464 10.642 1.00 11.26 N ATOM 194 CA SER 22 -4.524 34.693 10.842 1.00 11.26 C ATOM 195 CB SER 22 -5.005 35.766 9.881 1.00 11.26 C ATOM 196 OG SER 22 -4.717 37.046 10.415 1.00 11.26 O ATOM 198 C SER 22 -4.843 35.197 12.243 1.00 11.26 C ATOM 199 O SER 22 -3.940 35.726 12.904 1.00 11.26 O ATOM 200 N LEU 23 -6.086 35.060 12.721 1.00 12.25 N ATOM 202 CA LEU 23 -6.293 35.127 14.156 1.00 12.25 C ATOM 203 CB LEU 23 -6.888 36.487 14.578 1.00 12.25 C ATOM 204 CG LEU 23 -5.963 37.714 14.594 1.00 12.25 C ATOM 205 CD1 LEU 23 -6.597 38.852 13.795 1.00 12.25 C ATOM 206 CD2 LEU 23 -5.671 38.176 16.030 1.00 12.25 C ATOM 207 C LEU 23 -7.288 33.996 14.382 1.00 12.25 C ATOM 208 O LEU 23 -7.135 33.104 15.207 1.00 12.25 O ATOM 209 N ALA 24 -8.408 34.256 13.685 1.00 14.01 N ATOM 211 CA ALA 24 -9.656 33.511 13.547 1.00 14.01 C ATOM 212 CB ALA 24 -10.582 34.089 14.485 1.00 14.01 C ATOM 213 C ALA 24 -10.369 33.159 12.214 1.00 14.01 C ATOM 214 O ALA 24 -11.555 33.513 12.122 1.00 14.01 O ATOM 215 N ALA 25 -9.810 32.504 11.202 1.00 11.91 N ATOM 217 CA ALA 25 -10.609 32.377 9.950 1.00 11.91 C ATOM 218 CB ALA 25 -9.717 32.226 8.808 1.00 11.91 C ATOM 219 C ALA 25 -11.845 31.492 9.714 1.00 11.91 C ATOM 220 O ALA 25 -12.377 31.493 8.589 1.00 11.91 O ATOM 221 N ASN 26 -12.420 30.888 10.753 1.00 14.27 N ATOM 223 CA ASN 26 -13.578 30.019 10.509 1.00 14.27 C ATOM 224 CB ASN 26 -13.653 28.937 11.599 1.00 14.27 C ATOM 225 CG ASN 26 -13.853 29.513 13.007 1.00 14.27 C ATOM 226 OD1 ASN 26 -12.887 29.793 13.719 1.00 14.27 O ATOM 227 ND2 ASN 26 -15.110 29.671 13.412 1.00 14.27 N ATOM 230 C ASN 26 -14.957 30.694 10.359 1.00 14.27 C ATOM 231 O ASN 26 -15.894 30.047 9.890 1.00 14.27 O ATOM 232 N GLU 27 -15.057 31.997 10.661 1.00 15.07 N ATOM 234 CA GLU 27 -16.347 32.702 10.566 1.00 15.07 C ATOM 235 CG GLU 27 -16.055 33.892 12.878 1.00 15.07 C ATOM 236 CD GLU 27 -16.683 34.115 14.242 1.00 15.07 C ATOM 237 OE1 GLU 27 -17.456 35.084 14.391 1.00 15.07 O ATOM 238 OE2 GLU 27 -16.399 33.322 15.165 1.00 15.07 O ATOM 239 C GLU 27 -16.531 33.934 9.666 1.00 15.07 C ATOM 240 O GLU 27 -17.522 34.659 9.816 1.00 15.07 O ATOM 241 CB GLU 27 -16.902 32.991 11.979 1.00 15.07 C ATOM 242 N LEU 28 -15.607 34.172 8.737 1.00 13.39 N ATOM 244 CA LEU 28 -15.727 35.315 7.833 1.00 13.39 C ATOM 245 CB LEU 28 -14.609 36.337 8.048 1.00 13.39 C ATOM 246 CG LEU 28 -14.949 37.577 8.886 1.00 13.39 C ATOM 247 CD1 LEU 28 -13.947 37.724 10.035 1.00 13.39 C ATOM 248 CD2 LEU 28 -14.949 38.848 8.023 1.00 13.39 C ATOM 249 C LEU 28 -15.775 34.868 6.403 1.00 13.39 C ATOM 250 O LEU 28 -15.156 33.861 6.045 1.00 13.39 O ATOM 251 N ARG 29 -16.537 35.592 5.585 1.00 13.56 N ATOM 253 CA ARG 29 -16.611 35.219 4.192 1.00 13.56 C ATOM 254 CB ARG 29 -18.067 35.283 3.715 1.00 13.56 C ATOM 255 CG ARG 29 -18.986 34.256 4.381 1.00 13.56 C ATOM 256 CD ARG 29 -20.425 34.354 3.876 1.00 13.56 C ATOM 257 NE ARG 29 -20.572 33.913 2.486 1.00 13.56 N ATOM 259 CZ ARG 29 -21.718 33.894 1.803 1.00 13.56 C ATOM 260 NH1 ARG 29 -21.722 33.472 0.546 1.00 13.56 N ATOM 263 NH2 ARG 29 -22.858 34.291 2.360 1.00 13.56 N ATOM 266 C ARG 29 -15.695 36.145 3.393 1.00 13.56 C ATOM 267 O ARG 29 -16.052 37.278 3.047 1.00 13.56 O ATOM 268 N VAL 30 -14.446 35.673 3.264 1.00 11.79 N ATOM 270 CA VAL 30 -13.390 36.292 2.452 1.00 11.79 C ATOM 271 CB VAL 30 -12.227 36.978 3.287 1.00 11.79 C ATOM 272 CG1 VAL 30 -11.584 38.090 2.468 1.00 11.79 C ATOM 273 CG2 VAL 30 -12.736 37.541 4.617 1.00 11.79 C ATOM 274 C VAL 30 -12.923 34.984 1.793 1.00 11.79 C ATOM 275 O VAL 30 -11.832 34.464 2.076 1.00 11.79 O ATOM 276 N THR 31 -13.745 34.507 0.855 1.00 12.19 N ATOM 278 CA THR 31 -13.493 33.267 0.119 1.00 12.19 C ATOM 279 CB THR 31 -14.824 32.485 -0.164 1.00 12.19 C ATOM 280 OG1 THR 31 -15.692 32.598 0.970 1.00 12.19 O ATOM 282 CG2 THR 31 -14.547 30.997 -0.414 1.00 12.19 C ATOM 283 C THR 31 -12.836 33.731 -1.180 1.00 12.19 C ATOM 284 O THR 31 -12.799 34.937 -1.457 1.00 12.19 O ATOM 285 N GLU 32 -12.309 32.781 -1.953 1.00 11.73 N ATOM 287 CA GLU 32 -11.640 33.068 -3.218 1.00 11.73 C ATOM 288 CB GLU 32 -10.705 31.916 -3.585 1.00 11.73 C ATOM 289 CG GLU 32 -9.602 31.678 -2.556 1.00 11.73 C ATOM 290 CD GLU 32 -8.684 30.531 -2.935 1.00 11.73 C ATOM 291 OE1 GLU 32 -7.670 30.780 -3.621 1.00 11.73 O ATOM 292 OE2 GLU 32 -8.974 29.380 -2.545 1.00 11.73 O ATOM 293 C GLU 32 -12.669 33.393 -4.320 1.00 11.73 C ATOM 294 O GLU 32 -12.812 32.667 -5.309 1.00 11.73 O ATOM 295 N ARG 33 -13.444 34.454 -4.048 1.00 12.01 N ATOM 297 CA ARG 33 -14.478 34.996 -4.938 1.00 12.01 C ATOM 298 CB ARG 33 -15.835 35.116 -4.221 1.00 12.01 C ATOM 299 CG ARG 33 -17.059 35.259 -5.152 1.00 12.01 C ATOM 300 CD ARG 33 -18.368 35.374 -4.372 1.00 12.01 C ATOM 301 NE ARG 33 -18.488 36.640 -3.643 1.00 12.01 N ATOM 303 CZ ARG 33 -19.527 36.996 -2.887 1.00 12.01 C ATOM 304 NH1 ARG 33 -20.575 36.192 -2.733 1.00 12.01 N ATOM 307 NH2 ARG 33 -19.518 38.173 -2.275 1.00 12.01 N ATOM 310 C ARG 33 -13.939 36.394 -5.328 1.00 12.01 C ATOM 311 O ARG 33 -13.287 37.050 -4.505 1.00 12.01 O ATOM 312 N PRO 34 -14.170 36.854 -6.587 1.00 11.59 N ATOM 313 CD PRO 34 -14.535 36.118 -7.821 1.00 11.59 C ATOM 314 CA PRO 34 -13.635 38.184 -6.918 1.00 11.59 C ATOM 315 CB PRO 34 -13.412 38.086 -8.429 1.00 11.59 C ATOM 316 CG PRO 34 -14.534 37.185 -8.870 1.00 11.59 C ATOM 317 C PRO 34 -14.377 39.486 -6.513 1.00 11.59 C ATOM 318 O PRO 34 -15.473 39.775 -7.008 1.00 11.59 O ATOM 319 N PHE 35 -13.818 40.157 -5.497 1.00 9.95 N ATOM 321 CA PHE 35 -14.260 41.474 -5.003 1.00 9.95 C ATOM 322 CB PHE 35 -14.971 41.354 -3.627 1.00 9.95 C ATOM 323 CG PHE 35 -16.025 42.425 -3.356 1.00 9.95 C ATOM 324 CD1 PHE 35 -17.380 42.214 -3.710 1.00 9.95 C ATOM 325 CD2 PHE 35 -15.679 43.636 -2.709 1.00 9.95 C ATOM 326 CE1 PHE 35 -18.375 43.191 -3.426 1.00 9.95 C ATOM 327 CE2 PHE 35 -16.662 44.622 -2.419 1.00 9.95 C ATOM 328 CZ PHE 35 -18.014 44.397 -2.778 1.00 9.95 C ATOM 329 C PHE 35 -12.850 42.066 -4.863 1.00 9.95 C ATOM 330 O PHE 35 -12.196 41.850 -3.846 1.00 9.95 O ATOM 331 N TRP 36 -12.401 42.850 -5.845 1.00 8.69 N ATOM 333 CA TRP 36 -11.032 43.369 -5.817 1.00 8.69 C ATOM 334 CB TRP 36 -10.321 43.084 -7.156 1.00 8.69 C ATOM 335 CG TRP 36 -9.978 41.605 -7.434 1.00 8.69 C ATOM 336 CD2 TRP 36 -8.786 40.887 -7.038 1.00 8.69 C ATOM 337 CE2 TRP 36 -8.903 39.565 -7.557 1.00 8.69 C ATOM 338 CE3 TRP 36 -7.631 41.228 -6.296 1.00 8.69 C ATOM 339 CD1 TRP 36 -10.734 40.706 -8.152 1.00 8.69 C ATOM 340 NE1 TRP 36 -10.095 39.492 -8.225 1.00 8.69 N ATOM 342 CZ2 TRP 36 -7.907 38.577 -7.359 1.00 8.69 C ATOM 343 CZ3 TRP 36 -6.632 40.240 -6.097 1.00 8.69 C ATOM 344 CH2 TRP 36 -6.785 38.931 -6.631 1.00 8.69 C ATOM 345 C TRP 36 -10.738 44.788 -5.338 1.00 8.69 C ATOM 346 O TRP 36 -11.001 45.763 -6.036 1.00 8.69 O ATOM 347 N ILE 37 -10.287 44.873 -4.080 1.00 7.79 N ATOM 349 CA ILE 37 -9.885 46.122 -3.411 1.00 7.79 C ATOM 350 CB ILE 37 -10.650 46.322 -2.061 1.00 7.79 C ATOM 351 CG2 ILE 37 -10.397 47.750 -1.492 1.00 7.79 C ATOM 352 CG1 ILE 37 -12.155 46.170 -2.293 1.00 7.79 C ATOM 353 CD1 ILE 37 -12.912 45.415 -1.185 1.00 7.79 C ATOM 354 C ILE 37 -8.367 45.937 -3.203 1.00 7.79 C ATOM 355 O ILE 37 -7.867 45.972 -2.078 1.00 7.79 O ATOM 356 N SER 38 -7.641 45.875 -4.320 1.00 6.81 N ATOM 358 CA SER 38 -6.194 45.638 -4.351 1.00 6.81 C ATOM 359 CB SER 38 -5.814 45.150 -5.744 1.00 6.81 C ATOM 360 OG SER 38 -6.419 45.970 -6.726 1.00 6.81 O ATOM 362 C SER 38 -5.322 46.831 -3.909 1.00 6.81 C ATOM 363 O SER 38 -4.329 47.177 -4.561 1.00 6.81 O ATOM 364 N SER 39 -5.670 47.382 -2.740 1.00 7.60 N ATOM 366 CA SER 39 -5.009 48.552 -2.150 1.00 7.60 C ATOM 367 CB SER 39 -5.983 49.240 -1.197 1.00 7.60 C ATOM 368 OG SER 39 -6.414 48.341 -0.186 1.00 7.60 O ATOM 370 C SER 39 -3.678 48.379 -1.420 1.00 7.60 C ATOM 371 O SER 39 -2.792 49.217 -1.583 1.00 7.60 O ATOM 372 N PHE 40 -3.510 47.285 -0.671 1.00 4.94 N ATOM 374 CA PHE 40 -2.283 47.091 0.118 1.00 4.94 C ATOM 375 CB PHE 40 -2.610 47.259 1.615 1.00 4.94 C ATOM 376 CG PHE 40 -3.125 48.643 1.995 1.00 4.94 C ATOM 377 CD1 PHE 40 -4.510 48.879 2.155 1.00 4.94 C ATOM 378 CD2 PHE 40 -2.227 49.712 2.243 1.00 4.94 C ATOM 379 CE1 PHE 40 -4.999 50.153 2.555 1.00 4.94 C ATOM 380 CE2 PHE 40 -2.701 50.992 2.644 1.00 4.94 C ATOM 381 CZ PHE 40 -4.091 51.213 2.800 1.00 4.94 C ATOM 382 C PHE 40 -1.310 45.928 -0.095 1.00 4.94 C ATOM 383 O PHE 40 -0.444 45.696 0.762 1.00 4.94 O ATOM 384 N ILE 41 -1.376 45.252 -1.245 1.00 3.95 N ATOM 386 CA ILE 41 -0.473 44.115 -1.526 1.00 3.95 C ATOM 387 CB ILE 41 -1.077 43.099 -2.585 1.00 3.95 C ATOM 388 CG2 ILE 41 -0.251 41.770 -2.653 1.00 3.95 C ATOM 389 CG1 ILE 41 -2.565 42.827 -2.316 1.00 3.95 C ATOM 390 CD1 ILE 41 -3.005 42.011 -1.027 1.00 3.95 C ATOM 391 C ILE 41 0.912 44.596 -1.954 1.00 3.95 C ATOM 392 O ILE 41 1.370 44.301 -3.067 1.00 3.95 O ATOM 393 N GLY 42 1.557 45.389 -1.095 1.00 3.81 N ATOM 395 CA GLY 42 2.883 45.841 -1.455 1.00 3.81 C ATOM 396 C GLY 42 2.920 46.947 -2.479 1.00 3.81 C ATOM 397 O GLY 42 2.353 46.759 -3.560 1.00 3.81 O ATOM 398 N ARG 43 3.520 48.093 -2.141 1.00 4.42 N ATOM 400 CA ARG 43 3.616 49.237 -3.058 1.00 4.42 C ATOM 401 CB ARG 43 4.151 50.472 -2.330 1.00 4.42 C ATOM 402 CG ARG 43 3.149 51.128 -1.397 1.00 4.42 C ATOM 403 CD ARG 43 3.729 52.355 -0.694 1.00 4.42 C ATOM 404 NE ARG 43 3.948 53.483 -1.604 1.00 4.42 N ATOM 406 CZ ARG 43 4.443 54.671 -1.250 1.00 4.42 C ATOM 407 NH1 ARG 43 4.788 54.926 0.008 1.00 4.42 N ATOM 410 NH2 ARG 43 4.594 55.615 -2.168 1.00 4.42 N ATOM 413 C ARG 43 4.579 48.789 -4.164 1.00 4.42 C ATOM 414 O ARG 43 5.754 49.171 -4.238 1.00 4.42 O ATOM 415 N SER 44 3.998 47.918 -4.998 1.00 2.74 N ATOM 417 CA SER 44 4.609 47.259 -6.148 1.00 2.74 C ATOM 418 CB SER 44 3.956 45.899 -6.360 1.00 2.74 C ATOM 419 OG SER 44 4.466 45.260 -7.506 1.00 2.74 O ATOM 421 C SER 44 4.375 48.125 -7.356 1.00 2.74 C ATOM 422 O SER 44 3.460 48.958 -7.357 1.00 2.74 O ATOM 423 N LYS 45 5.207 47.946 -8.382 1.00 3.21 N ATOM 425 CA LYS 45 5.061 48.789 -9.547 1.00 3.21 C ATOM 426 CG LYS 45 6.644 50.494 -8.414 1.00 3.21 C ATOM 427 CD LYS 45 7.894 51.336 -8.616 1.00 3.21 C ATOM 428 CE LYS 45 8.219 52.148 -7.374 1.00 3.21 C ATOM 429 NZ LYS 45 9.442 52.978 -7.556 1.00 3.21 N ATOM 433 C LYS 45 4.723 48.123 -10.885 1.00 3.21 C ATOM 434 O LYS 45 4.614 48.824 -11.892 1.00 3.21 O ATOM 435 CB LYS 45 6.316 49.672 -9.671 1.00 3.21 C TER END